Arnab SP, dos Santos ALC, Fumagalli M and DeGiorgio M (2025). Efficient detection and characterization of targets of natural selection using transfer learning. Cold Spring Harbor Laboratory  10.1101/2025.03.05.641710

Korfmann K, Sellinger TPP, Freund F, Fumagalli M and Tellier A (2024). Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta Coalescent. Peer Community In  Peer Community Journal  vol. 4, 10.24072/pcjournal.397

Mas-Sandoval A, Mathieson S and Fumagalli M (2023). The genomic footprint of social stratification in admixing American populations. Elife  Elife  vol. 12, 10.7554/elife.84429

Mas-Sandoval A, Jin C, Fracassetti M and Fumagalli M (2023). ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language. F1000research  vol. 11, 126-126. 10.12688/f1000research.104368.2

Korfmann K, Gaggiotti OE and Fumagalli M (2023). Deep Learning in Population Genetics. Oxford University Press (Oup)  Genome Biology and Evolution  vol. 15, (2) 10.1093/gbe/evad008

Soraggi S, Rhodes J, Altinkaya I, Tarrant O, Balloux F, Fisher MC and Fumagalli M (2022). HMMploidy: inference of ploidy levels from short-read sequencing data. Peer Community In  Peer Community Journal  vol. 2, 10.24072/pcjournal.178

Mas-Sandoval A, Pope NS, Nielsen KN, Altinkaya I, Fumagalli M and Korneliussen TS (2022). Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data. Gigascience  vol. 11, 10.1093/gigascience/giac032

Mendoza-Revilla J, Chacón-Duque JC, Fuentes-Guajardo M, Ormond L, Wang K, Hurtado M, Villegas V, Granja V, Acuña-Alonzo V, Jaramillo C, Arias W, Barquera R, Gómez-ValdCrossed D Sign©s J, Villamil-Ramírez H, Silva De Cerqueira CC, Badillo Rivera KM, Nieves-Colón MA, Gignoux CR, Wojcik GL, Moreno-Estrada ADS, Hünemeier T, Ramallo V, Schuler-Faccini L, Gonzalez-JosCrossed D Sign© R, Bortolini MC, Canizales-Quinteros S, Gallo C, Poletti G, Bedoya G and Rothhammer F (2022). Disentangling Signatures of Selection before and after European Colonization in Latin Americans. Molecular Biology and Evolution  vol. 39, (4) 10.1093/molbev/msac076

Gower G, Picazo PI, Fumagalli M and Racimo F (2021). Detecting adaptive introgression in human evolution using convolutional neural networks. Elife  Elife  vol. 10, 10.7554/elife.64669

Isildak U, Stella A and Fumagalli M (2021). Distinguishing between recent balancing selection and incomplete sweep using deep neural networks. Wiley  Molecular Ecology Resources  vol. 21, (8) 2706-2718. 10.1111/1755-0998.13379

Fumagalli M (2020). Detecting loci under natural selection from temporal genomic data of selfing populations. Peer Community In  Peer Community in Evolutionary Biology  10.24072/pci.evolbiol.100110

Dehasque M, Ávila‐Arcos MC, Díez‐del‐Molino D, Fumagalli M, Guschanski K, Lorenzen ED, Malaspinas A, Marques‐Bonet T, Martin MD, Murray GGR, Papadopulos AST, Therkildsen NO, Wegmann D, Dalén L and Foote AD (2020). Inference of natural selection from ancient DNA. Oxford University Press (Oup)  Evolution Letters  vol. 4, (2) 94-108. 10.1002/evl3.165

Torada L, Lorenzon L, Beddis A, Isildak U, Pattini L, Mathieson S and Fumagalli M (2019). ImaGene: a convolutional neural network to quantify natural selection from genomic data. Springer Nature  Bmc Bioinformatics  vol. 20, (Suppl 9) 10.1186/s12859-019-2927-x

Fumagalli M, Camus SM, Diekmann Y, Burke A, Camus MD, Norman PJ, Joseph A, Abi-Rached L, Benazzo A, Rasteiro R, Mathieson I, Topf M, Parham P, Thomas MG and Brodsky FM (2019). Genetic diversity of CHC22 clathrin impacts its function in glucose metabolism. Elife  Elife  vol. 8, 10.7554/elife.41517

Wright AE, Rogers TF, Fumagalli M, Cooney CR and Mank JE (2019). Phenotypic sexual dimorphism is associated with genomic signatures of resolved sexual conflict. Wiley  Molecular Ecology  vol. 28, (11) 2860-2871. 10.1111/mec.15115

Fox EA, Wright AE, Fumagalli M and Vieira FG (2019). ngsLD: evaluating linkage disequilibrium using genotype likelihoods. Oxford University Press (Oup)  Bioinformatics  vol. 35, (19) 3855-3856. 10.1093/bioinformatics/btz200

Adhikari K, Mendoza-Revilla J, Sohail A, Fuentes-Guajardo M, Lampert J, Chacón-Duque JC, Hurtado M, Villegas V, Granja V, Acuña-Alonzo V, Jaramillo C, Arias W, Lozano RB, Everardo P, Gómez-Valdés J, Villamil-Ramírez H, Silva de Cerqueira CC, Hunemeier T, Ramallo V, Schuler-Faccini L, Salzano FM, Gonzalez-José R, Bortolini M-C, Canizales-Quinteros S, Gallo C, Poletti G, Bedoya G, Rothhammer F, Tobin DJ and Fumagalli M (2019). A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia. Springer Nature  Nature Communications  vol. 10, (1) 10.1038/s41467-018-08147-0

O'Hanlon SJ, Rieux A, Farrer RA, Rosa GM, Waldman B, Bataille A, Kosch TA, Murray KA, Brankovics B, Fumagalli M, Martin MD, Wales N, Alvarado-Rybak M, Bates KA, Berger L, Böll S, Brookes L, Clare F, Courtois EA, Cunningham AA, Doherty-Bone TM, Ghosh P, Gower DJ, Hintz WE, Höglund J, Jenkinson TS, Lin C-F, Laurila A, Loyau A and Martel A (2018). Recent Asian origin of chytrid fungi causing global amphibian declines. American Association For The Advancement of Science (Aaas)  Science  vol. 360, (6389) 621-627. 10.1126/science.aar1965

Wright AE, Fumagalli M, Cooney CR, Bloch NI, Vieira FG, Buechel SD, Kolm N and Mank JE (2018). Male‐biased gene expression resolves sexual conflict through the evolution of sex‐specific genetic architecture. Oxford University Press (Oup)  Evolution Letters  vol. 2, (2) 52-61. 10.1002/evl3.39

Elfekih S, Etter P, Tay WT, Fumagalli M, Gordon K, Johnson E and De Barro P (2018). Genome-wide analyses of the Bemisia tabaci species complex reveal contrasting patterns of admixture and complex demographic histories. Public Library of Science (Plos)  Plos One  vol. 13, (1) 10.1371/journal.pone.0190555

Lassalle F, Spagnoletti M, Fumagalli M, Shaw L, Dyble M, Walker C, Thomas MG, Migliano AB and Balloux F (2017). Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet. Wiley  Molecular Ecology  vol. 27, (1) 182-195. 10.1111/mec.14435

Benazzo A, Trucchi E, Cahill JA, Delser PM, Mona S, Fumagalli M, Bunnefeld L, Cornetti L, Ghirotto S, Girardi M, Ometto L, Panziera A, Rota-Stabelli O, Zanetti E, Karamanlidis A, Groff C, Paule L, Gentile L, Vilà C, Vicario S, Boitani L, Orlando L, Fuselli S, Vernesi C, Shapiro B, Ciucci P and Bertorelle G (2017). Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers. Proceedings of The National Academy of Sciences  Proceedings of The National Academy of Sciences of The United States of America  vol. 114, (45) e9589-e9597. 10.1073/pnas.1707279114

Fumagalli M and Balloux F (2017). Natural Selection Associated With Infectious Diseases. On Human Nature: Biology, Psychology, Ethics, Politics, and Religion  10.1016/B978-0-12-420190-3.00011-9

Fumagalli M and Balloux F (2017). Chapter 11 Natural Selection Associated With Infectious Diseases. On Human Nature  Elsevier  10.1016/b978-0-12-420190-3.00011-9

Racimo F, Gokhman D, Fumagalli M, Ko A, Hansen T, Moltke I, Albrechtsen A, Carmel L, Huerta-Sánchez E and Nielsen R (2016). Archaic Adaptive Introgression in TBX15/WARS2. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 34, (3) 509-524. 10.1093/molbev/msw283

Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, Worley KC, Excoffier L, Morin PA, Gilbert MTP and Wolf JBW (2016). Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Springer Nature  Nature Communications  vol. 7, (1) 10.1038/ncomms11693

Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, Boulygina E, Tsygankova S, Neuditschko M, Jagannathan V, Thèves C, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Sicheritz-Ponten T, Popov R, Grigoriev S, Alekseev AN, Rubin EM, McCue M and Rieder S (2015). Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. Proceedings of The National Academy of Sciences  Proceedings of The National Academy of Sciences of The United States of America  vol. 112, (50) e6889-e6897. 10.1073/pnas.1513696112

Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T and Willerslev E (2015). Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse. Elsevier  Current Biology  vol. 25, (19) 2577-2583. 10.1016/j.cub.2015.08.032

Fumagalli M, Moltke I, Grarup N, Racimo F, Bjerregaard P, Jørgensen ME, Korneliussen TS, Gerbault P, Skotte L, Linneberg A, Christensen C, Brandslund I, Jørgensen T, Huerta-Sánchez E, Schmidt EB, Pedersen O, Hansen T, Albrechtsen A and Nielsen R (2015). Greenlandic Inuit show genetic signatures of diet and climate adaptation. American Association For The Advancement of Science (Aaas)  Science  vol. 349, (6254) 1343-1347. 10.1126/science.aab2319

Vieira FG, Lassalle F, Korneliussen TS and Fumagalli M (2015). Improving the estimation of genetic distances from Next-Generation Sequencing data. Oxford University Press (Oup)  Biological Journal of The Linnean Society  vol. 117, (1) 139-149. 10.1111/bij.12511

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J and Gilbert MTP (2015). Erratum: The origin and evolution of maize in the Southwestern United States. Springer Nature  Nature Plants  vol. 1, (1) 10.1038/nplants.2015.7

da Fonseca RR, Smith BD, Wales N, Cappellini E, Skoglund P, Fumagalli M, Samaniego JA, Carøe C, Ávila-Arcos MC, Hufnagel DE, Korneliussen TS, Vieira FG, Jakobsson M, Arriaza B, Willerslev E, Nielsen R, Hufford MB, Albrechtsen A, Ross-Ibarra J and Gilbert MTP (2015). The origin and evolution of maize in the Southwestern United States. Springer Nature  Nature Plants  vol. 1, (1) 10.1038/nplants.2014.3

Moltke I, Fumagalli M, Korneliussen TS, Crawford JE, Bjerregaard P, Jørgensen ME, Grarup N, Gulløv HC, Linneberg A, Pedersen O, Hansen T, Nielsen R and Albrechtsen A (2014). Uncovering the Genetic History of the Present-Day Greenlandic Population. Elsevier  American Journal of Human Genetics  vol. 96, (1) 54-69. 10.1016/j.ajhg.2014.11.012

Schubert M, Jónsson H, Chang D, Der Sarkissian C, Ermini L, Ginolhac A, Albrechtsen A, Dupanloup I, Foucal A, Petersen B, Fumagalli M, Raghavan M, Seguin-Orlando A, Korneliussen TS, Velazquez AMV, Stenderup J, Hoover CA, Rubin C-J, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, MacHugh DE, Kalbfleisch T, MacLeod JN, Rubin EM, Sicheritz-Ponten T, Andersson L, Hofreiter M, Marques-Bonet T and Gilbert MTP (2014). Prehistoric genomes reveal the genetic foundation and cost of horse domestication. Proceedings of The National Academy of Sciences  Proceedings of The National Academy of Sciences of The United States of America  vol. 111, (52) e5661-e5669. 10.1073/pnas.1416991111

Jónsson H, Schubert M, Seguin-Orlando A, Ginolhac A, Petersen L, Fumagalli M, Albrechtsen A, Petersen B, Korneliussen TS, Vilstrup JT, Lear T, Myka JL, Lundquist J, Miller DC, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Stagegaard J, Strauss G, Bertelsen MF, Sicheritz-Ponten T, Antczak DF, Bailey E, Nielsen R, Willerslev E and Orlando L (2014). Speciation with gene flow in equids despite extensive chromosomal plasticity. Proceedings of The National Academy of Sciences  Proceedings of The National Academy of Sciences of The United States of America  vol. 111, (52) 18655-18660. 10.1073/pnas.1412627111

Moltke I, Grarup N, Jørgensen ME, Bjerregaard P, Treebak JT, Fumagalli M, Korneliussen TS, Andersen MA, Nielsen TS, Krarup NT, Gjesing AP, Zierath JR, Linneberg A, Wu X, Sun G, Jin X, Al-Aama J, Wang J, Borch-Johnsen K, Pedersen O, Nielsen R, Albrechtsen A and Hansen T (2014). A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes. Springer Nature  Nature  vol. 512, (7513) 190-193. 10.1038/nature13425

Fumagalli M and Sironi M (2014). Human genome variability, natural selection and infectious diseases. Elsevier  Current Opinion in Immunology  vol. 30, 9-16. 10.1016/j.coi.2014.05.001

Liu S, Lorenzen ED, Fumagalli M, Li B, Harris K, Xiong Z, Zhou L, Korneliussen TS, Somel M, Babbitt C, Wray G, Li J, He W, Wang Z, Fu W, Xiang X, Morgan CC, Doherty A, O’Connell MJ, McInerney JO, Born EW, Dalén L, Dietz R, Orlando L, Sonne C, Zhang G, Nielsen R, Willerslev E and Wang J (2014). Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears. Elsevier  Cell  vol. 157, (4) 785-794. 10.1016/j.cell.2014.03.054

Fumagalli M, Vieira FG, Linderoth T and Nielsen R (2014). ngsTools: methods for population genetics analyses from next-generation sequencing data. Oxford University Press (Oup)  Bioinformatics  vol. 30, (10) 1486-1487. 10.1093/bioinformatics/btu041

Fumagalli M (2013). Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics Inferences. Public Library of Science (Plos)  Plos One  vol. 8, (11) 10.1371/journal.pone.0079667

Fumagalli M, Vieira FG, Korneliussen TS, Linderoth T, Huerta-Sánchez E, Albrechtsen A and Nielsen R (2013). Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data. Oxford University Press (Oup)  Genetics  vol. 195, (3) 979-992. 10.1534/genetics.113.154740

Vieira FG, Fumagalli M, Albrechtsen A and Nielsen R (2013). Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation. Cold Spring Harbor Laboratory  Genome Research  vol. 23, (11) 1852-1861. 10.1101/gr.157388.113

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PLF, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas A-S, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AMV, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A and Mortensen C (2013). Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Springer Nature  Nature  vol. 499, (7456) 74-78. 10.1038/nature12323

Somel M, Sayres MAW, Jordan G, Huerta-Sanchez E, Fumagalli M, Ferrer-Admetlla A and Nielsen R (2013). A Scan for Human-Specific Relaxation of Negative Selection Reveals Unexpected Polymorphism in Proteasome Genes. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 30, (8) 1808-1815. 10.1093/molbev/mst098

Cagliani R, Guerini FR, Rubio‐Acero R, Baglio F, Forni D, Agliardi C, Griffanti L, Fumagalli M, Pozzoli U, Riva S, Calabrese E, Sikora M, Casals F, Comi GP, Bresolin N, Cáceres M, Clerici M and Sironi M (2013). Long‐Standing Balancing Selection in the THBS4 Gene: Influence on Sex‐Specific Brain Expression and Gray Matter Volumes in Alzheimer Disease. Hindawi  Human Mutation  vol. 34, (5) 743-753. 10.1002/humu.22301

Cagliani R, Pozzoli U, Forni D, Cassinotti A, Fumagalli M, Giani M, Fichera M, Lombardini M, Ardizzone S, Asselta R, de Franchis R, Riva S, Biasin M, Comi GP, Bresolin N, Clerici M and Sironi M (2013). Crohn's Disease Loci Are Common Targets of Protozoa-Driven Selection. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 30, (5) 1077-1087. 10.1093/molbev/mst020

Fumagalli M, Fracassetti M, Cagliani R, Forni D, Pozzoli U, Comi GP, Marini F, Bresolin N, Clerici M and Sironi M (2012). An evolutionary history of the selectin gene cluster in humans. Springer Nature  Heredity  vol. 109, (2) 117-126. 10.1038/hdy.2012.20

Cagliani R, Guerini FR, Fumagalli M, Riva S, Agliardi C, Galimberti D, Pozzoli U, Goris A, Dubois B, Fenoglio C, Forni D, Sanna S, Zara I, Pitzalis M, Zoledziewska M, Cucca F, Marini F, Comi GP, Scarpini E, Bresolin N, Clerici M and Sironi M (2012). A Trans-Specific Polymorphism in ZC3HAV1 Is Maintained by Long-Standing Balancing Selection and May Confer Susceptibility to Multiple Sclerosis. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 29, (6) 1599-1613. 10.1093/molbev/mss002

Cagliani R, Riva S, Marino C, Fumagalli M, D’Angelo MG, Riva V, Comi GP, Pozzoli U, Forni D, Cáceres M, Bresolin N, Clerici M and Sironi M (2011). Variants in SNAP25 are targets of natural selection and influence verbal performances in women. Springer Nature  Cellular and Molecular Life Sciences  vol. 69, (10) 1705-1715. 10.1007/s00018-011-0896-y

Manry J, Laval G, Patin E, Fornarino S, Itan Y, Fumagalli M, Sironi M, Tichit M, Bouchier C, Casanova J-L, Barreiro LB and Quintana-Murci L (2011). Evolutionary genetic dissection of human interferons. Rockefeller University Press  Journal of Experimental Medicine  vol. 208, (13) 2747-2759. 10.1084/jem.20111680

Fumagalli M, Sironi M, Pozzoli U, Ferrer-Admetlla A, Pattini L and Nielsen R (2011). Correction: Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution. Public Library of Science (Plos)  Plos Genetics  vol. 7, (11) 10.1371/annotation/ca428083-dbcb-476a-956c-d7bb6e317cf7

Fumagalli M, Sironi M, Pozzoli U, Ferrer-Admettla A, Pattini L and Nielsen R (2011). Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution. Public Library of Science (Plos)  Plos Genetics  vol. 7, (11) 10.1371/journal.pgen.1002355

Cagliani R, Fumagalli M, Guerini FR, Riva S, Galimberti D, Comi GP, Agliardi C, Scarpini E, Pozzoli U, Forni D, Caputo D, Asselta R, Biasin M, Paraboschi EM, Bresolin N, Clerici M and Sironi M (2011). Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysis. Springer Nature  Human Genetics  vol. 131, (1) 87-97. 10.1007/s00439-011-1053-2

Cagliani R, Riva S, Fumagalli M, Biasin M, Caputo SL, Mazzotta F, Piacentini L, Pozzoli U, Bresolin N, Clerici M and Sironi M (2011). A POSITIVELY SELECTED APOBEC3H HAPLOTYPE IS ASSOCIATED WITH NATURAL RESISTANCE TO HIV‐1 INFECTION. Wiley  Evolution  vol. 65, (11) 3311-3322. 10.1111/j.1558-5646.2011.01368.x

Cagliani R, Riva S, Pozzoli U, Fumagalli M, Comi GP, Bresolin N, Clerici M and Sironi M (2011). Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving. Springer Nature  Bmc Ecology and Evolution  vol. 11, (1) 10.1186/1471-2148-11-171

Sironi M, Guerini FR, Agliardi C, Biasin M, Cagliani R, Fumagalli M, Caputo D, Cassinotti A, Ardizzone S, Zanzottera M, Bolognesi E, Riva S, Kanari Y, Miyazawa M and Clerici M (2011). An Evolutionary Analysis of RAC2 Identifies Haplotypes Associated with Human Autoimmune Diseases. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 28, (12) 3319-3329. 10.1093/molbev/msr164

Cagliani R, Riva S, Biasin M, Fumagalli M, Pozzoli U, Caputo SL, Mazzotta F, Piacentini L, Bresolin N, Clerici M and Sironi M (2010). Genetic diversity at endoplasmic reticulum aminopeptidases is maintained by balancing selection and is associated with natural resistance to HIV-1 infection. Oxford University Press (Oup)  Human Molecular Genetics  vol. 19, (23) 4705-4714. 10.1093/hmg/ddq401

Cagliani R, Fumagalli M, Biasin M, Piacentini L, Riva S, Pozzoli U, Bonaglia MC, Bresolin N, Clerici M and Sironi M (2010). Long-term balancing selection maintains trans-specific polymorphisms in the human TRIM5 gene. Springer Nature  Human Genetics  vol. 128, (6) 577-588. 10.1007/s00439-010-0884-6

Fumagalli M, Pozzoli U, Cagliani R, Comi GP, Bresolin N, Clerici M and Sironi M (2010). The landscape of human genes involved in the immune response to parasitic worms. Springer Nature  Bmc Ecology and Evolution  vol. 10, (1) 10.1186/1471-2148-10-264

Fumagalli M, Cagliani R, Riva S, Pozzoli U, Biasin M, Piacentini L, Comi GP, Bresolin N, Clerici M and Sironi M (2010). Population Genetics of IFIH1: Ancient Population Structure, Local Selection, and Implications for Susceptibility to Type 1 Diabetes. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 27, (11) 2555-2566. 10.1093/molbev/msq141

Torri F, Akelai A, Lupoli S, Sironi M, Amann‐Zalcenstein D, Fumagalli M, Dal Fiume C, Ben‐Asher E, Kanyas K, Cagliani R, Cozzi P, Trombetti G, Lievers LS, Salvi E, Orro A, Beckmann JS, Lancet D, Kohn Y, Milanesi L, Ebstein RB, Lerer B and Macciardi F (2010). Fine mapping of AHI1 as a schizophrenia susceptibility gene: from association to evolutionary evidence. Wiley  The Faseb Journal  vol. 24, (8) 3066-3082. 10.1096/fj.09-152611

Cagliani R, Fumagalli M, Riva S, Pozzoli U, Fracassetti M, Bresolin N, Comi GP and Sironi M (2010). Polymorphisms in the CPB2 Gene Are Maintained by Balancing Selection and Result in Haplotype-Preferential Splicing of Exon 7. Oxford University Press (Oup)  Molecular Biology and Evolution  vol. 27, (8) 1945-1954. 10.1093/molbev/msq082

Fumagalli M, Cagliani R, Pozzoli U and Sironi M (2010). Response to Wilson et al. Elsevier  American Journal of Human Genetics  vol. 86, (3) 493-495. 10.1016/j.ajhg.2010.01.032

Fumagalli M, Pozzoli U, Cagliani R, Comi GP, Bresolin N, Clerici M and Sironi M (2010). Genome-Wide Identification of Susceptibility Alleles for Viral Infections through a Population Genetics Approach. Public Library of Science (Plos)  Plos Genetics  vol. 6, (2) 10.1371/journal.pgen.1000849

Cagliani R, Fumagalli M, Riva S, Pozzoli U, Comi GP, Bresolin N and Sironi M (2010). Genetic variability in the ACE gene region surrounding the Alu I/D polymorphism is maintained by balancing selection in human populations. Wolters Kluwer  Pharmacogenetics and Genomics  vol. 20, (2) 131-134. 10.1097/fpc.0b013e3283333532

Pozzoli U, Fumagalli M, Cagliani R, Comi GP, Bresolin N, Clerici M and Sironi M (2010). The role of protozoa-driven selection in shaping human genetic variability. Elsevier  Trends in Genetics  vol. 26, (3) 95-99. 10.1016/j.tig.2009.12.010

Cagliani R, Riva S, Fumagalli M, Pozzoli U, Comi GP, Bresolin N, Clerici M and Sironi M (2010). Balancing selection in the extended MHC region maintains a subset of alleles with opposite risk profile for different autoimmune diseases. Springer Nature  Genome Biology  vol. 11, (Suppl 1) 10.1186/gb-2010-11-s1-p38

Fumagalli M, Cagliani R, Pozzoli U, Riva S, Comi GP, Menozzi G, Bresolin N and Sironi M (2009). A population genetics study of the Familial Mediterranean Fever gene: evidence of balancing selection under an overdominance regime. Springer Nature  Genes & Immunity  vol. 10, (8) 678-686. 10.1038/gene.2009.59

Cagliani R, Fumagalli M, Pozzoli U, Riva S, Comi GP, Torri F, Macciardi F, Bresolin N and Sironi M (2009). Diverse Evolutionary Histories for β-adrenoreceptor Genes in Humans. Elsevier  American Journal of Human Genetics  vol. 85, (1) 64-75. 10.1016/j.ajhg.2009.06.005

Cagliani R, Fumagalli M, Pozzoli U, Riva S, Cereda M, Comi GP, Pattini L, Bresolin N and Sironi M (2009). A complex selection signature at the human AVPR1B gene. Springer Nature  Bmc Ecology and Evolution  vol. 9, (1) 10.1186/1471-2148-9-123

Fumagalli M, Pozzoli U, Cagliani R, Comi GP, Riva S, Clerici M, Bresolin N and Sironi M (2009). Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions. Rockefeller University Press  Journal of Experimental Medicine  vol. 206, (6) 1395-1408. 10.1084/jem.20082779

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